pyEpiAneufinder documentation

Python tools for identifying copy number variations from single-cell ATAC-seq data.

Contents

• Installation
• Quickstart
  • Executing the Program
  • Splitting Cells Into Clones
  • Calculating Karyogram Metrics
  • Calculating CNV Burden Per Cell
  • Coverage Profiles Per Cell
• Input and Output
  • Inputs
  • Outputs
• API Reference
  • epiAneufinder()
  • split_subclones()
  • karyo_gainloss()
  • plot_single_cell_profile()
  • compute_aneuploidy_across_sample()
  • compute_aneuploidy_by_chr()
  • compute_heterogeneity_across_sample()
  • compute_heterogeneity_by_chr()
  • compute_cnv_burden_cell()
• Revision Log
  • PyPI preparation revision
  • Completed areas