Calculating CNV Burden Per Cell

CNV burden is the aneuploidy score computed at the individual-cell level. It can be used as an additional feature when distinguishing tumor cells.

import pandas as pd
import pyEpiAneufinder as pea

res = pd.read_csv(
    "results_sample_data/outs/result_table.tsv.gz",
    sep="\t",
    index_col=0,
)
cnv_burden = pea.compute_cnv_burden_cell(res)