Quickstart
==========

This section walks through the main ``pyEpiAneufinder`` workflow using the
bundled example dataset and the primary public helper functions documented for
the first release.

.. toctree::
   :maxdepth: 1

   executing-the-program
   splitting-cells-into-clones
   calculating-karyogram-metrics
   calculating-cnv-burden-per-cell
   coverage-profiles-per-cell