API Reference
=============

The first release documents these primary public entry points.

.. autofunction:: pyEpiAneufinder.epiAneufinder

.. autofunction:: pyEpiAneufinder.split_subclones

.. autofunction:: pyEpiAneufinder.karyo_gainloss

.. autofunction:: pyEpiAneufinder.plot_single_cell_profile

.. autofunction:: pyEpiAneufinder.compute_aneuploidy_across_sample

.. autofunction:: pyEpiAneufinder.compute_aneuploidy_by_chr

.. autofunction:: pyEpiAneufinder.compute_heterogeneity_across_sample

.. autofunction:: pyEpiAneufinder.compute_heterogeneity_by_chr

.. autofunction:: pyEpiAneufinder.compute_cnv_burden_cell